From 999a5d1139d8d19fa033ef14241347567bb45947 Mon Sep 17 00:00:00 2001 From: AroneyS Date: Thu, 21 Dec 2023 14:15:17 +1000 Subject: [PATCH] shorten descriptions in example workflow --- README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index a4bca6f2..93838f2e 100644 --- a/README.md +++ b/README.md @@ -67,13 +67,15 @@ conda env config vars set CHECKM2DB="/checkm2/db/dir" ## Example workflow ```bash -# Assemble and recover from each sample individually with 20 samples used for differential abundance binning +# Assemble and recover from each sample individually +# 20 samples used for differential abundance binning binchicken coassemble \ --forward-list samples_forward.txt --reverse-list samples_reverse.txt \ --run-aviary --single-assembly \ --cores 64 --output binchicken_single_assembly -# Assemble and recover from 2-sample coassemblies, prioritising samples with genomes not previously recovered +# Assemble and recover from 2-sample coassemblies +# Prioritising samples with genomes not previously recovered binchicken iterate \ --coassemble-output binchicken_single_assembly \ --run-aviary --assemble-unmapped \