From 6b579dda99a10da7cf286399602f6eff4201d729 Mon Sep 17 00:00:00 2001
From: AroneyS <samuel.aroney@qut.edu.au>
Date: Tue, 26 Nov 2024 09:50:32 +1000
Subject: [PATCH] update dependencies

---
 pyproject.toml | 15 +++++++++------
 1 file changed, 9 insertions(+), 6 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index c1606f34..48e46e2b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -12,14 +12,17 @@ description = "Bin Chicken - targeted recovery of low abundance metagenome assem
 readme = "README.md"
 license = { file="LICENSE" }
 requires-python = ">=3.10"
-dependencies = ["snakemake>=6.0.5",
-  "mamba",
-  "networkx",
-  "bird_tool_utils",
+dependencies = ["snakemake>=8.25.1",
+  "snakemake-executor-plugin-cluster-generic>=1.0.9",
+  "snakemake-executor-plugin-slurm>=0.11.2",
+  "networkx>=3.1",
+  "bird-tool-utils>=0.4.0",
   "extern",
   "ruamel.yaml>=0.15.99",
-  "polars",
-  "pyarrow"]
+  "polars>=1.2.0",
+  "pyarrow",
+  "sourmash>=4.8.0",
+  "sourmash-plugin-branchwater>=0.9.0"]
 classifiers = [
     "Topic :: Scientific/Engineering :: Bio-Informatics",
 ]