sudo ./raxmlGUI-2.0.6.AppImage --no-sandbox
13:08:16.766 › App starting...
13:08:17.236 › Checking for update
13:08:17.237 › Checking for update...
13:08:17.621 › Update for version 2.0.6 is not available (latest version: 2.0.6, downgrade is disallowed).
13:08:17.621 › Update not available.
Check unused filename: output.tre
Error creating proxy: Unknown or unsupported transport “disabled” for address “disabled:” (g-io-error-quark, 13)
Error creating proxy: Unknown or unsupported transport “disabled” for address “disabled:” (g-io-error-quark, 13)
Error creating proxy: Unknown or unsupported transport “disabled” for address “disabled:” (g-io-error-quark, 13)
Error creating proxy: Unknown or unsupported transport “disabled” for address “disabled:” (g-io-error-quark, 13)
Error creating proxy: Unknown or unsupported transport “disabled” for address “disabled:” (g-io-error-quark, 13)

(raxmlgui:16247): dconf-WARNING **: 13:08:18.857: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.870: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.885: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.901: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.918: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.935: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.953: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.968: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:18.986: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.002: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.020: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.041: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.057: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.074: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.092: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.105: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.122: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:19.992: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.004: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.018: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.036: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.052: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.069: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.086: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.103: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.119: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.136: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.153: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.170: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:20.191: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:21.273: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”

(raxmlgui:16247): dconf-WARNING **: 13:08:21.273: failed to commit changes to dconf: Unknown or unsupported transport “disabled” for address “disabled:”
ALIGNMENT_SELECTED {
  canceled: false,
  filePaths: [ '/home/.../Pota_cytb.fas' ]
}
Parse alignment /home/.../Pota_cytb.fas
error Error: Command failed: /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/readal -in /home/.../Pota_cytb.fas -type -format
/bin/sh: line 1: /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/readal: Permission denied

    at ChildProcess.exithandler (child_process.js:317:12)
    at ChildProcess.emit (events.js:315:20)
    at maybeClose (internal/child_process.js:1048:16)
    at Socket.<anonymous> (internal/child_process.js:439:11)
    at Socket.emit (events.js:315:20)
    at Pipe.<anonymous> (net.js:673:12) {
  killed: false,
  code: 126,
  signal: null,
  cmd: '/tmp/.mount_raxmlGTZ1NCf/resources/static/bin/readal -in /home/.../Pota_cytb.fas -type -format',
  stdout: '',
  stderr: '/bin/sh: line 1: /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/readal: Permission denied\n'
}
Alignment with first two sequences: {
  sequences: [
    {
      taxon: 'Potamotrygon_orbignyi',
      code: 'GGCCTATTCCTAGCCATACACTACACCCCAGATATCTCATCAGCCTTCTCCTCAATCGCACATATCTCCCGTGACGTAAACTACGGATGACTAATCCGCAATATCCACGCCAACGGCGCCTCCATATTTTTCATCTGCACCTACTTACATATCGCTCGAGGACTATATTACGGCTCTTACCTAAACAAAGAAACCTGAAACATTGGAGTCATCATCCTACTACTACTTATAATCACCGCATTCGTAGGCTACGTCCTTCCCTGAGGACAAATATCATTCTGAGGGGCAACCGTTATCACCAACCTACTATCAGCCTTCCCATATATCGGAAATATACTTGTACAATGAATCTGAGGTGGATTCTCAGTCGACAACGCAACACTAACTCGATTCTTCACATTTCATTTTCTCTTTCCCTTTATAATTGCCGCACTGACTATAATTCACCTTCTCTTCCTTCATGAAGCAGGATCTAACAATCCAACGGGTTTGACATCAGATATGGACAAAATCCAATTCCACCCCTACTACTGATACAAAGACCTAGTCGGCTTCTTCTTCCTTCTACTCCTACTCGCTATTCTAGCCCTATTTATACCCAACCTACTAAGCGACnnnn',
      dataType: 'nucleotide'
    },
    {
      taxon: 'Potamotrygon_motoro',
      code: 'GGCCTATTCCTAGCCATACACTACACCCCAGATATCTCATCAGCCTTCTCCTCAATCGCACATATCTCCCGTGACGTAAACTACGGATGACTAATCCGCAATATCCACGCCAACGGCGCCTCCATATTTTTCATCTGCACCTACTTACATATCGCTCGAGGACTATATTACGGCTCTTACCTAAACAAAGAAACCTGAAACATTGGAGTCATCATCCTACTACTACTTATAATCACCGCATTCGTAGGCTACGTCCTTCCCTGAGGACAAATATCATTCTGAGGGGCAACCGTTATCACCAACCTACTATCAGCCTTCCCATATATCGGAAATATACTTGTACAATGAATCTGAGGCGGATTCTCAGTCGACAACGCAACACTAACTCGATTCTTCACATTTCATTTTCTCTTTCCCTTTATAATTGCCGCACTGACTATAATTCACCTTCTCTTCCTTCATGAAGCAGGATCTAACAATCCAACGGGTTTGACATCAGATATGGACAAAATCCAATTCCACCCCTACTACTGATACAAAGACCTAGTCGGCTTCTTCTTCCTTCTACTCCTACTCGCTATTCTAACCCTATTTATACCCAACCTACTAAGCGACnnnn',
      dataType: 'nucleotide'
    }
  ],
  numSequences: 20,
  length: 619,
  fileFormat: 'FASTA',
  hasInvariantSites: false,
  dataType: 'nucleotide',
  typecheckingComplete: true
}
Check unused filename: Pota_cytb.tre
Alignment '1_/home/.../Pota_cytb.fas': Run modeltest with args -d,nt,-i,/home/.../Pota_cytb.fas,-o,/home/.../RAxML_GUI_ModelTest_Pota_cytb,--force,-p,2...
Run modeltest-ng with args: [
  '-d',
  'nt',
  '-i',
  '/home/.../Pota_cytb.fas',
  '-o',
  '/home/.../RAxML_GUI_ModelTest_Pota_cytb',
  '--force',
  '-p',
  2
]
Process finished with event 'error' and error/code/signal: Error: spawn /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/modeltest-ng EACCES
    at Process.ChildProcess._handle.onexit (internal/child_process.js:269:19)
    at onErrorNT (internal/child_process.js:465:16)
    at processTicksAndRejections (internal/process/task_queues.js:80:21) {
  errno: -13,
  code: 'EACCES',
  syscall: 'spawn /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/modeltest-ng',
  path: '/tmp/.mount_raxmlGTZ1NCf/resources/static/bin/modeltest-ng',
  spawnargs: [
    '-d',
    'nt',
    '-i',
    '/home/.../Pota_cytb.fas',
    '-o',
    '/home/.../RAxML_GUI_ModelTest_Pota_cytb',
    '--force',
    '-p',
    2
  ]
}
Modeltest run error: Error: spawn /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/modeltest-ng EACCES
    at Process.ChildProcess._handle.onexit (internal/child_process.js:269:19)
    at onErrorNT (internal/child_process.js:465:16)
    at processTicksAndRejections (internal/process/task_queues.js:80:21) {
  errno: -13,
  code: 'EACCES',
  syscall: 'spawn /tmp/.mount_raxmlGTZ1NCf/resources/static/bin/modeltest-ng',
  path: '/tmp/.mount_raxmlGTZ1NCf/resources/static/bin/modeltest-ng',
  spawnargs: [
    '-d',
    'nt',
    '-i',
    '/home/.../Pota_cytb.fas',
    '-o',
    '/home/.../RAxML_GUI_ModelTest_Pota_cytb',
    '--force',
    '-p',
    2
  ]
}
Check unused filename: Pota_cytb.tre