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Scikit-learn version issue: suggestion #81
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I have same error! |
Sorry, I didn't |
Hi, yes this just seems to be a reporting issue when verifying the version of scikit-learn. I'd suggested installing the version listed in the README. |
Did this work for anyone? I have the following message in the log from the -test: VIBRANT Caution: running a version of Scikit-Learn lower than v0.21.3 will likely cause issues. With pip you can update by running "pip install --upgrade scikit-learn==0.21.3". I have an updated version of scikit-learn (from conda list): Please help. I have no idea how to solve this. |
I am also having a similar issue, im not able to install vibrant from bioconda, and am unable to install that specific version of scikit-learn. I've been trying to troubleshoot this issue for about a month with no luck. Are you planning on putting out a new release that updates scikit-learn? i think it would really improve the ease of installation |
Had the same issue due to incompatible versions of python and scikit. I downgraded to python=3.7.13, then installed scikit-learn=0.21.3 and vibrant=1.2.1. Ran the VIBRANT_setup.py -test message successfully. |
There seem to be several issues related to VIBRANT_setup.ph errors due to installing a wrong version of scikit-learn and python 3.8. Right now the error refers to installing a scikit version lower than 0.21.3, when the actual error usually occurs when installing higher versions, which is confusing. Could you just change the error message to reflect that?
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