From ddb65af4fc53a5206dcc602e6e1c5afc6d25323f Mon Sep 17 00:00:00 2001
From: AmandaBirmingham <lists@imladris.com>
Date: Wed, 28 Feb 2024 11:30:23 -0800
Subject: [PATCH] WIP: add pysyndna install

---
 .github/workflows/main.yaml | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
index be6491a..00e274f 100644
--- a/.github/workflows/main.yaml
+++ b/.github/workflows/main.yaml
@@ -27,7 +27,13 @@ jobs:
           environment-file: qiime2-latest-py38-linux-conda.yml
           auto-activate-base: false
 
-      - name: Install and run unit tests
+      - name: Install pysyndna into qiime2 environment
+        run: |
+          wget https://raw.githubusercontent.com/AmandaBirmingham/pysyndna/main/environment.yml -O pysyndna.yml
+          conda env update --name qiime2 --file pysyndna.yml
+          pip install git+https://github.com/AmandaBirmingham/pysyndna.git
+
+      - name: Install q2-pysyndna and run unit tests
         run: |
           conda install pytest
           which python