cluster.yaml

__default__:
  account: akrinos
  command_options:
    slurm:
      account: --account={}
      command: sbatch --parsable --qos=unlim
      key_mapping: null
      mem: --mem={}g
      name: --job-name={}
      nodes: -N {}
      queue: --partition={}
      threads: -n {}
      time: --time={}
  cpupertask: 18
  mem: 180
  nodes: 1
  queue: scavenger
  system: slurm
  tasks: 1
  time: 5000
fastqc:
  account: akrinos
  cpupertask: 5
  mem: 1
  queue: scavenger
  tasks: 1
  time: 720
fastqc_trimmed:
  account: akrinos
  cpupertask: 5
  mem: 1
  queue: scavenger
  tasks: 1
  time: 720
required:
  accountname: akrinos
  defaultqueue: scavenger
  maxcores: 1
  maxcpuspertask: 18
  maxmemory: 180
  maxtasks: 1
transabyssmerge:
  account: akrinos
  cpupertask: 18
  mem: 180
  nodes: 1
  queue: compute
  tasks: 1
  time: 10000
transabyss:
  account: akrinos
  cpupertask: 36
  mem: 180
  nodes: 3
  queue: compute
  tasks: 3
  time: 10000
trimmomatic:
  account: akrinos
  cpupertask: 5
  mem: 48
  nodes: 1
  queue: scavenger
  tasks: 1
  time: 1400
trinity:
  account: akrinos
  cpupertask: 72
  mem: 800
  nodes: 1
  queue: bigmem
  tasks: 1
  time: 10000
velvet:
  account: akrinos
  cpupertask: 72
  mem: 800
  nodes: 1
  queue: bigmem
  tasks: 1
  time: 15000
rnaspades:
  account: akrinos
  cpupertask: 36
  mem: 180
  nodes: 2
  queue: scavenger
  tasks: 2
  time: 5000