From 02eb3b758b56b8ac0466804a939856595b560047 Mon Sep 17 00:00:00 2001
From: Alexander Bender <21218078+ATpoint@users.noreply.github.com>
Date: Thu, 6 Jun 2024 08:29:29 +0100
Subject: [PATCH] fix path to hg38 combined blacklist

---
 main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index cd46378..590a53c 100644
--- a/main.nf
+++ b/main.nf
@@ -328,7 +328,7 @@ workflow {
 
         if(params.atacseq){
             if(params.species=="hs") {
-                blacklist = Channel.fromPath("$baseDir/assets/hg38/hg38_combined_blacklist.bed")
+                blacklist = Channel.fromPath("$baseDir/assets/hg38/hg38_combined_blacklist_v2.bed")
             }
             if(params.species=="mm") {
                 blacklist = Channel.fromPath("$baseDir/assets/mm10/mm10_combined_blacklist.bed")