Dockerfile.galaxyxpand

FROM ubuntu:24.04
LABEL maintainer="Christophe Antoniewski <drosofff@gmail.com>"
ARG DEBIAN_FRONTEND=noninteractive


# Install ``python-software-properties``, ``software-properties-common`` and PostgreSQL 16 (default in 24.04)
#  There are some warnings (in red) that show up during the build. You can hide
#  them by prefixing each apt-get statement with DEBIAN_FRONTEND=noninteractive
RUN apt update && \
    \
    echo "===> Allow start of services"  && \
    echo "exit 0" > /usr/sbin/policy-rc.d  && \
    \
    apt install -y -qq --no-install-recommends \
    apt-transport-https software-properties-common 2to3 \
    apt-utils git nano python3-pip python3-virtualenv \
    postgresql postgresql-contrib \
    locales dirmngr && apt clean

RUN pip install ansible --break-system-packages
# Run the rest of the commands as the ``postgres`` user created by the ``postgres-15``
# package when it was ``apt-get installed``

USER postgres

# Create a PostgreSQL role named ``docker`` with ``docker`` as the password and
# then create a database `docker` owned by the ``docker`` role.
# Note: here we use ``&&\`` to run commands one after the other - the ``\``
#       allows the RUN command to span multiple lines.
# User = admin
# password = password
# role = admin
# database = revamp


RUN    /etc/init.d/postgresql start &&\
    psql --command "CREATE USER root WITH SUPERUSER PASSWORD 'galaxy';" && \
    createdb -O root rootdb && \
    psql --command "CREATE USER galaxy WITH PASSWORD 'galaxy';" && \
    createdb -O galaxy galaxy

# Adjust PostgreSQL configuration so that remote connections to the
# database are possible.
RUN echo "host all  all    0.0.0.0/0  md5" >> /etc/postgresql/16/main/pg_hba.conf

# And add ``listen_addresses`` to ``/etc/postgresql/16/main/postgresql.conf``
RUN echo "listen_addresses='*'" >> /etc/postgresql/16/main/postgresql.conf

USER root

RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && locale-gen
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8

RUN mkdir /etc/ssl/private-copy /var/lib/postgresql-copy && \
    mv /var/lib/postgresql/* /var/lib/postgresql-copy && \
    mv /etc/ssl/private/* /etc/ssl/private-copy/ && \
    rm -R /var/lib/postgresql /etc/ssl/private/ && \
    mv /var/lib/postgresql-copy /var/lib/postgresql && \
    mv /etc/ssl/private-copy /etc/ssl/private && \
    chmod -R 0700 /var/lib/postgresql /etc/ssl/private && \
    chown -R postgres:postgres /var/lib/postgresql /var/run/postgresql \
    /var/log/postgresql /etc/ssl/private /etc/postgresql


RUN apt-get install sudo -o Dpkg::Options::="--force-confold" && \
    echo 'root ALL=(ALL:ALL) ALL' >> /etc/sudoers && \
    echo 'postgres ALL=(ALL:ALL) ALL' >> /etc/sudoers && \
    echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers

ONBUILD  RUN  DEBIAN_FRONTEND=noninteractive  apt-get update   && \
              echo "===> Updating TLS certificates..."         && \
              apt-get install -y openssl ca-certificates


COPY  .  /setup
WORKDIR /setup

ENV LC_ALL=en_US.UTF-8 \
    LANG=en_US.UTF-8

# in next step, a faulty handler that triggered systemctl is deleted
# before running the playbook

RUN echo "remote_tmp = /setup/.ansible/tmp" >> ansible.cfg && \
    service postgresql start && \
    sed -i '/slurm-wlm/d' playbook.yml && sed -i '/slurm-drmaa-dev/d' playbook.yml && \
    ansible-galaxy install -r requirements.yml -p roles -f && \
    # following was commented with the release_24.1
    # head -n -4 roles/galaxyproject.galaxy/handlers/main.yml > tmp.txt &&\
    # mv tmp.txt roles/galaxyproject.galaxy/handlers/main.yml &&\
    ansible-playbook -i environments/Docker/hosts playbook.yml

ONBUILD  WORKDIR  /setup
ONBUILD  COPY  .  /setup
ADD docker_startup.sh /docker_startup.sh
RUN chmod +x /docker_startup.sh

EXPOSE :80
EXPOSE :21
EXPOSE :8800
EXPOSE :9002

CMD ["/docker_startup.sh"]