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benchmark_models.yaml
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Bachmann_MSB2011:
llh: 418.40573341425295
note: benchmark collection reference value matches up to sign when applying log10-correction +sum(log(meas*log(10)) / 2
Becker_Science2010:
llh: -364.118614198023
Beer_MolBioSystems2014:
llh: 58622.9145631413
note: benchmark collection reference parameters do not match petab, but reference llh has been confirmed for parameters reported there up to sign
Boehm_JProteomeRes2014:
llh: -138.22199693517703
note: benchmark collection reference ignores factor 1/2
Borghans_BiophysChem1997:
llh: 83.3237191357272
note: benchmark collection reference value matches up to sign when applying log10-correction +sum(log(meas*log(10)) / 2
Brannmark_JBC2010:
llh: -141.889113770537
Bruno_JExpBot2016:
llh: 46.688176988431806
note: benchmark collection only reports chi2 value, but llh value can be derived
Chen_MSB2009:
llh: -115700.1192629893
note: benchmark collection reference ignores factor 1/2
Crauste_CellSystems2017:
llh: -190.96521897435176
note: benchmark collection only reports chi2 value, but llh value can be derived
Elowitz_Nature2000:
llh: 63.20279991419332
note: benchmark collection reference value matches up to sign when applying log10-correction +sum(log(meas*log(10))) / 2
Fiedler_BMC2016:
llh: 58.58390161681
Fujita_SciSignal2010:
llh: 53.08377736998929
# Hass_PONE2017 None
Isensee_JCB2018:
llh: -3949.375966548649
note: benchmark collection reference also includes prior valuation, tested based on agreement of chi2 values
Lucarelli_CellSystems2018:
llh: -1681.6059879426584
Merkle_PCB2016:
llh: -1388.59682706751
note: unchecked
Raia_CancerResearch2011:
llh: 690.619495552297
note: unchecked
Schwen_PONE2014:
llh: -943.9992988598723
note: benchmark collection reference value does not match, but model outputs do. maybe due to priors
Sneyd_PNAS2002:
llh: 319.79177818768756
note: benchmark collection reference ignores factor 1/2
Sobotta_Frontiers2017:
llh: -1346.75391686389
note: unchecked
Swameye_PNAS2003:
llh: -142.118024712038
note: unchecked
Weber_BMC2015:
llh: -296.2017922646865
note: benchmark collection reference ignores factor -1/2
Zheng_PNAS2012:
llh: 278.33353271001477
note: benchmark collection reference ignores factor 1/2