diff --git a/truvari/collapse.py b/truvari/collapse.py index 7cd44c79..a41ab49e 100644 --- a/truvari/collapse.py +++ b/truvari/collapse.py @@ -433,13 +433,13 @@ def sort_maxqual(b1, b2): def sort_common(b1, b2): """ - Order entries from highest to lowest MAC + Order entries from highest to highest AC """ - mac1 = truvari.allele_freq_annos(b1)["MAC"] - mac2 = truvari.allele_freq_annos(b2)["MAC"] - if mac1 < mac2: - return 1 + mac1 = truvari.allele_freq_annos(b1)["AC"] + mac2 = truvari.allele_freq_annos(b2)["AC"] if mac1 > mac2: + return 1 + if mac1 < mac2: return -1 return sort_first(b1, b2)