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[REVIEW] Single-Linkage Hierarchical Clustering Python Wrapper #3631

Merged
merged 118 commits into from
Mar 30, 2021
Merged

[REVIEW] Single-Linkage Hierarchical Clustering Python Wrapper #3631

merged 118 commits into from
Mar 30, 2021

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cjnolet
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@cjnolet cjnolet commented Mar 18, 2021 •
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Closes #3099

cjnolet and others added 30 commits December 15, 2020 12:33
@cjnolet
Checking in
43a8118
@cjnolet
Getting MST to return results
335e1f9
@cjnolet
Still trying to figure out why MST isn't returning expected results
8dc58ba
@cjnolet
Adding symmetrization to linkage
cef178a
@cjnolet
Fixing style
1f00cbf
@cjnolet
Merge branch 'branch-0.18' into fea-018-hdbscan
209733b
@cjnolet
Test is executing end-to-end, need to verify results
957192f
@cjnolet
Adding new symmetrizaiton
20e32e8
@cjnolet
Checking in
107b34d
@cjnolet
Merge branch 'branch-0.18' into fea-018-hdbscan
5dd72ba 
Conflicts:
	cpp/src_prims/sparse/coo.cuh
@cjnolet
Merge branch 'branch-0.18' into fea-018-hdbscan
3fe27c7
@cjnolet
Adding final cluster extraction
48fbd1a
@cjnolet
Fixing style
98dbf47
@cjnolet
Fixing symmetrizatio bug
567ab06
@cjnolet
Output matches sklearn
7635b25
@cjnolet
Updating include check for test
f3f45eb
@cjnolet
Fixing style
02125d6
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Checking in
c8f1a58
@cjnolet
Cleaning up logging
20f57a4
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Updating raft commit
3b08d79
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Fixing style
3e95e4b
@cjnolet
Fixing style
9525b80
@cjnolet
Cleaning up log statements & fixing small bug in inherit_labels
33b1948
@cjnolet
Adding test for outliers
2ad0580
@cjnolet
Merge branch 'branch-0.18' into fea-018-hdbscan
067ca4b
@cjnolet
Updating test cmakelists
c69d965
@cjnolet
Adding benchmark for linkage
7f78358
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Changes from benchmarking
e608d2b
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Updating changes
0a9cf0d
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Checking in
f012f35
@cjnolet cjnolet changed the title [WIP] Single-Linkage Hierarchical Clustering Python Wrapper [REVIEW] Single-Linkage Hierarchical Clustering Python Wrapper Mar 26, 2021
@cjnolet cjnolet added 3 - Ready for Review Ready for review by team feature request New feature or request non-breaking Non-breaking change and removed 2 - In Progress Currenty a work in progress labels Mar 26, 2021
@github-actions github-actions bot added the CMake label Mar 26, 2021
dantegd
dantegd requested changes Mar 26, 2021
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Looks very clean and neat! Just had super minor comments

python/cuml/cluster/__init__.py Show resolved Hide resolved
python/cuml/cluster/agglomerative.pyx Show resolved Hide resolved
python/cuml/cluster/agglomerative.pyx Outdated Show resolved Hide resolved
python/cuml/cluster/agglomerative.pyx Outdated Show resolved Hide resolved
cpp/cmake/Dependencies.cmake Outdated Show resolved Hide resolved
@dantegd dantegd added 4 - Waiting on Author Waiting for author to respond to review and removed 3 - Ready for Review Ready for review by team labels Mar 26, 2021
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Codecov Report

Merging #3631 (0883026) into branch-0.19 (0883026) will not change coverage.
The diff coverage is n/a.

❗ Current head 0883026 differs from pull request most recent head 3f6217d. Consider uploading reports for the commit 3f6217d to get more accurate results
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@@             Coverage Diff              @@
##           branch-0.19    #3631   +/-   ##
============================================
  Coverage        73.13%   73.13%           
============================================
  Files              215      215           
  Lines            16987    16987           
============================================
  Hits             12423    12423           
  Misses            4564     4564
Flag Coverage Δ
non-dask 73.13% <0.00%> (ø)

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@cjnolet cjnolet added 4 - Waiting on Reviewer Waiting for reviewer to review or respond and removed 4 - Waiting on Author Waiting for author to respond to review labels Mar 27, 2021
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cjnolet commented Mar 29, 2021

rerun tests

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cjnolet commented Mar 30, 2021

rerun tests

@cjnolet cjnolet merged commit 668aea1 into rapidsai:branch-0.19 Mar 30, 2021
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[FEA] Single-linkage Hierarchical Clustering
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@cjnolet @ajschmidt8 @codecov-io @dantegd